Unable to integrate with oxygen to run xquery

> let $content := //MessageHeader > return $content

> I've got basex set up using jetty and can query within the firefox browser > to return data for example using the url > > http://localhost:8080/rest/DDEX?query=//MessageHeader > > however my equivalent oxygen xquery does not return data and rather > continues to run not stopping > > > I've recently downloaded the jars and configured the Data Source Drivers as > per the http://docs.basex.org/wiki/Integrating_oXygen > > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/basex-xqj-1.2.3.jar > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/xqj-api-1.0.jar > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/xqj2-0.1.0.jar > > In the basex connection which is enabled I've got the following settings > > port 8080 > databaseName DDEX > logLevel > description > loginTimeout 6000 > serverName localhost > user admin > password admin > > I > set up a trasformation scenario with BaseX transformer with the following > xquery >

> > let $content := //MessageHeader > > return $content > > You could try to directly address the database in your query: > > let $content := db:open('DDEX')//MessageHeader > return $content > > Does this help? > Christian > ___________________________ > > > I've got basex set up using jetty and can query within the firefox > browser > > to return data for example using the url > > > > http://localhost:8080/rest/DDEX?query=//MessageHeader > > > > however my equivalent oxygen xquery does not return data and rather > > continues to run not stopping > > > > > > I've recently downloaded the jars and configured the Data Source Drivers > as > > per the http://docs.basex.org/wiki/Integrating_oXygen > > > > > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/basex-xqj-1.2.3.jar > > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/xqj-api-1.0.jar > > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/xqj2-0.1.0.jar > > > > In the basex connection which is enabled I've got the following settings > > > > port 8080 > > databaseName DDEX > > logLevel > > description > > loginTimeout 6000 > > serverName localhost > > user admin > > password admin > > > > I > > set up a trasformation scenario with BaseX transformer with the > following > > xquery > > >

>> > port 8080

> let $content := //MessageHeader > return $content[1]

Am 22.11.2012 um 00:47 schrieb Alex Muir <alex.g.muir at gmail.com>: > Same response... > > On Wed, Nov 21, 2012 at 6:26 PM, Christian Grün <christian.gruen at gmail.com> wrote: > > let $content := //MessageHeader > > return $content > > You could try to directly address the database in your query: > > let $content := db:open('DDEX')//MessageHeader > return $content > > Does this help? > Christian > ___________________________ > > > I've got basex set up using jetty and can query within the firefox browser > > to return data for example using the url > > > > http://localhost:8080/rest/DDEX?query=//MessageHeader > > > > however my equivalent oxygen xquery does not return data and rather > > continues to run not stopping > > > > > > I've recently downloaded the jars and configured the Data Source Drivers as > > per the http://docs.basex.org/wiki/Integrating_oXygen > > > > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/basex-xqj-1.2.3.jar > > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/xqj-api-1.0.jar > > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/xqj2-0.1.0.jar > > > > In the basex connection which is enabled I've got the following settings > > > > port 8080 > > databaseName DDEX > > logLevel > > description > > loginTimeout 6000 > > serverName localhost > > user admin > > password admin > > > > I > > set up a trasformation scenario with BaseX transformer with the following > > xquery > > > > > > -- > - > > Alex G. Muir > Software Engineering Consultant > Linkedin Profile : http://ca.linkedin.com/pub/alex-muir/36/ab7/125 > Love African Kora Music? Take a moment to listen to Gambia's - Amadu Diabarte & Jali Bakary Konteh www.bafila.bandcamp.com Your support keeps Africa's griot tradition alive... Cheers! > > _______________________________________________ > BaseX-Talk mailing list > BaseX-Talk at mailman.uni-konstanz.de > https://mailman.uni-konstanz.de/mailman/listinfo/basex-talk

On Thu, Nov 22, 2012 at 1:12 PM, Michael Seiferle <ms at basex.org> wrote: > Hi Alex, > > I can only help you with two quick guesses at the moment: > > 1) > > > port 8080 >> > looks like a kind of HTTP Port; the server by default runs on port: 1984 > does this change anything? > > > 2) does changing your query to: > > let $content := //MessageHeader > return $content[1] > > change anything? > > I just tried to set up the oxygen integration as depicted in our wiki and > it worked on Mac OS, using the 7.3 ZIP and the XQJ Drivers found @xqj.net > I know this "it works on my machine" probably does not help you much, but > I am confident we can find the cause of your problem :-) > > Best > Michael > > Am 22.11.2012 um 00:47 schrieb Alex Muir <alex.g.muir at gmail.com>: > > Same response... > > On Wed, Nov 21, 2012 at 6:26 PM, Christian Grün <christian.gruen at gmail.com > > wrote: > >> > let $content := //MessageHeader >> > return $content >> >> You could try to directly address the database in your query: >> >> let $content := db:open('DDEX')//MessageHeader >> return $content >> >> Does this help? >> Christian >> ___________________________ >> >> > I've got basex set up using jetty and can query within the firefox >> browser >> > to return data for example using the url >> > >> > http://localhost:8080/rest/DDEX?query=//MessageHeader >> > >> > however my equivalent oxygen xquery does not return data and rather >> > continues to run not stopping >> > >> > >> > I've recently downloaded the jars and configured the Data Source >> Drivers as >> > per the http://docs.basex.org/wiki/Integrating_oXygen >> > >> > >> file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/basex-xqj-1.2.3.jar >> > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/xqj-api-1.0.jar >> > file:/mnt/xslt_volume/i4EnrichV7/analysis/resources/libs/xqj2-0.1.0.jar >> > >> > In the basex connection which is enabled I've got the following >> settings >> > >> > port 8080 >> > databaseName DDEX >> > logLevel >> > description >> > loginTimeout 6000 >> > serverName localhost >> > user admin >> > password admin >> > >> > I >> > set up a trasformation scenario with BaseX transformer with the >> following >> > xquery >> > >> > > > > -- > - > > Alex G. Muir > Software Engineering Consultant > Linkedin Profile : http://ca.linkedin.com/pub/alex-muir/36/ab7/125 > Love African Kora Music? Take a moment to listen to Gambia's - Amadu > Diabarte & Jali Bakary Konteh www.bafila.bandcamp.com Your support keeps > Africa's griot tradition alive... Cheers! > > _______________________________________________ > BaseX-Talk mailing list > BaseX-Talk at mailman.uni-konstanz.de > https://mailman.uni-konstanz.de/mailman/listinfo/basex-talk > > >

> Hi Michael, > > I'm seeing that I was doing things in a way that probably was not >

> > I had: > > 1. installed jetty sudo yum install jetty > 2. downloaded the war file to

> > This gave me access through at 8080 and I've been loading data using curl > calls without issue. I had been using the jar file standalone and so I >

> > I've since changed my approach to using the complete basex distribution >

them to the lib directory. Secondly the complete distribution doesn't come > with the basex-xqj-0.9.2.jar so I've put that into the lib with the other > jars, it makes me wonder though if the instructions "Add the following

> > Finally now I'm getting an error "Description: Could not initialize class > net.xqj.basex.bin.m" I'm not sure how to resolve this one although I >

> > I've started the server using the gui, loaded files into a db and used

> > Thoughts? > > Thanks Much > Alex

On Fri, Nov 23, 2012 at 5:57 AM, Charles Foster <charles at cfoster.net> wrote: > Hi Alex, > > > Have you tried using BaseX XQJ 1.2.3 [1]? > > > I suggest downloading the zip file on the xqj.net site and giving Oxygen all of the jars contained within the zip. > > > The XQDataSource class you will need to use within Oxygen is "net.xqj.basex.BaseXXQDataSource", if you have further problems, please let me know. > > > Regards, > > > Charles > > > [1] http://xqj.net/basex > > > > Hi Michael, > > > > > > I'm seeing that I was doing things in a way that probably was not > > recommended. > > > > > > I had: > > > > > > 1. installed jetty sudo yum install jetty > 2. downloaded the war file > to /usr/share/jetty/webapps/BaseX73.war > 3. Create context xml here > /usr/share/jetty/contexts/contexts/BaseX73.xml > 4. started the server cd > /usr/share/jetty/ and java -jar start.jar > > > > > > This gave me access through at 8080 and I've been loading data using > curl > calls without issue. I had been using the jar file standalone and so > I > thought using the war file in a similar way would be fine. I suppose it > > might but I could not connect using oxygen this way. > > > > > > I've since changed my approach to using the complete basex distribution > > although I've run into a few other issues. I suppose the first was that > > oxygen was asking for woodstox-core jars so I downloaded those and added > > them to the lib directory. Secondly the complete distribution doesn't come > > with the basex-xqj-0.9.2.jar so I've put that into the lib with the other > > jars, it makes me wonder though if the instructions "Add the following > JAR > files above with the *Add* Button: xqj-api-1.0.jar, xqj2-0.0.1.jar > and > basex-xqj-0.9.2.jar (the version names of the JAR file may differ) " > are > accurate give only the first 2 files are included in the zip. > > > > > > Finally now I'm getting an error "Description: Could not initialize > class > net.xqj.basex.bin.m" I'm not sure how to resolve this one although > I > assume I'm missing something. > > > > > > I've started the server using the gui, loaded files into a db and used > the > gui server administration interface to start the server. > > > > > > Thoughts? > > > > > > Thanks Much > Alex > > >

On Fri, Nov 23, 2012 at 10:04 AM, Alex Muir <alex.g.muir at gmail.com> wrote: > Hi Charles, > > I downloaded those. > > I'm starting fresh here this morning downloading the > http://files.basex.org/releases/7.3/BaseX73.zip which I unzip in a > folder, launch the gui and create a db with 3 xml files, close the gui and > launch the server > > Secondly I downloaded the http://xqj.net/basex/basex-xqj-1.2.3.zip and > I've unzipped the 3 required jars into /opt/Oxygen XML Editor 14/lib/ and > start oxygen > > I configure the basex data source in oxygen and run an xquery. The first > error message I get is > E [BaseX] Provider com.ctc.wstx.stax.WstxInputFactory not found. > > I resolve this error by downloading > http://repository.codehaus.org/org/codehaus/woodstox/woodstox-core-asl/4.1.4/woodstox-core-asl-4.1.4.jarinto /opt/Oxygen XML Editor 14/lib/ folder and run the xquery again and > get the following error > > Engine name: BaseX > Severity: error > Description: org/codehaus/stax2/XMLInputFactory2 > > I run again not changing anything and get the error > Engine name: BaseX > Severity: error > > Description: Could not initialize class net.xqj.basex.bin.m > > -- > Oddly I restart oxygen run again and get the message that: > E [BaseX] XQuery API for Java(XQJ) libraries are not present in > file:/opt/Oxygen XML Editor 14/lib/ directory. Please check the XQuery > section from the user manual for instructions. > > And yet they are there in the folder and listed in the data source as > follows > file:/opt/Oxygen%20XML%20Editor%2014/lib/basex-xqj-1.2.3.jar > file:/opt/Oxygen%20XML%20Editor%2014/lib/xqj-api-1.0.jar > file:/opt/Oxygen%20XML%20Editor%2014/lib/xqj2-0.1.0.jar > > > Any ideas what I'm doing wrong here? > Thanks > Alex > > > > On Fri, Nov 23, 2012 at 5:57 AM, Charles Foster <charles at cfoster.net>wrote: > >> Hi Alex, >> >> >> Have you tried using BaseX XQJ 1.2.3 [1]? >> >> >> I suggest downloading the zip file on the xqj.net site and giving Oxygen all of the jars contained within the zip. >> >> >> The XQDataSource class you will need to use within Oxygen is "net.xqj.basex.BaseXXQDataSource", if you have further problems, please let me know. >> >> >> Regards, >> >> >> Charles >> >> >> [1] http://xqj.net/basex >> >> >> > Hi Michael, >> >> > >> >> > I'm seeing that I was doing things in a way that probably was not > >> recommended. >> >> > >> >> > I had: >> >> > >> >> > 1. installed jetty sudo yum install jetty > 2. downloaded the war file >> to /usr/share/jetty/webapps/BaseX73.war > 3. Create context xml here >> /usr/share/jetty/contexts/contexts/BaseX73.xml > 4. started the server cd >> /usr/share/jetty/ and java -jar start.jar >> >> > >> >> > This gave me access through at 8080 and I've been loading data using >> curl > calls without issue. I had been using the jar file standalone and so >> I > thought using the war file in a similar way would be fine. I suppose it >> > might but I could not connect using oxygen this way. >> >> > >> >> > I've since changed my approach to using the complete basex distribution >> > although I've run into a few other issues. I suppose the first was that > >> oxygen was asking for woodstox-core jars so I downloaded those and added > >> them to the lib directory. Secondly the complete distribution doesn't come >> > with the basex-xqj-0.9.2.jar so I've put that into the lib with the other >> > jars, it makes me wonder though if the instructions "Add the following >> JAR > files above with the *Add* Button: xqj-api-1.0.jar, xqj2-0.0.1.jar >> and > basex-xqj-0.9.2.jar (the version names of the JAR file may differ) " >> are > accurate give only the first 2 files are included in the zip. >> >> > >> >> > Finally now I'm getting an error "Description: Could not initialize >> class > net.xqj.basex.bin.m" I'm not sure how to resolve this one although >> I > assume I'm missing something. >> >> > >> >> > I've started the server using the gui, loaded files into a db and used >> the > gui server administration interface to start the server. >> >> > >> >> > Thoughts? >> >> > >> >> > Thanks Much > Alex >> >> >> > > > -- > - > > Alex G. Muir > Software Engineering Consultant > Linkedin Profile : http://ca.linkedin.com/pub/alex-muir/36/ab7/125 > Love African Kora Music? Take a moment to listen to Gambia's - Amadu > Diabarte & Jali Bakary Konteh www.bafila.bandcamp.com Your support keeps > Africa's griot tradition alive... Cheers! > >

On Tue, Dec 11, 2012 at 8:52 PM, oXygen XML Editor Support <support at oxygenxml.com> wrote: > Hello, > > I just wanted to let you know that this problem has been resolved in the > latest maintenance build of Oxygen 14.1, 2012121012 (released on December > 11th): >> >> Database/XQJ: BaseX via XQJ no longer worked because of conflicting jar >> libraries. > > > You can download it from our web site: > http://www.oxygenxml.com/download.html > > The list of bug-fixes can be found here: > http://www.oxygenxml.com/build_history.html#2012121012 > > You can follow the release/build RSS feed here: > http://www.oxygenxml.com/rssBuildID.xml > > To upgrade: > - For Windows and Linux you can install the new build in the same folder as > the previous installation, it will automatically upgrade it. > Before you upgrade, if you have added files or made changes to any of the > files from the Oxygen installation folder(especially the frameworks folder), > you may want to create a backup of them because they will be overwritten > during the upgrade procedure. Custom frameworks will be preserved but we > recommend backing them up anyway, just to be safe. > - For Mac OS X you will have to install in a different folder and copy any > files you may have changed from the old folder (if any) to the new folder. > The Oxygen preferences will be preserved since they are located elsewhere > (user home folder). > > Let us know if you encounter further problems with this new build. > > Regards, > Ionela > > -- > Ionela Istodor > > oXygen XML Editor and Author Support > > Tel: +1-650-352-1250 ext.301 > > Fax: +40-251-461482 > support at oxygenxml.com > http://www.oxygenxml.com > > > --------------------------------------------------------------------------- > This message (including any attachments) contains confidential information > and is intended only for the individual(s) named. If you are not the named > addressee you should not disseminate, distribute or copy this e-mail. Please > notify the sender immediately by e-mail if you have received this e-mail by > mistake and delete this e-mail from your system. Any quotation contained > herein has a validity of 30 days, unless otherwise specified. > > > On 11/26/2012 2:04 PM, Alex Muir wrote: >> >> That works on my side... >> >> Thanks a tonne! >> Cheers >> >> On Mon, Nov 26, 2012 at 5:13 AM, oXygen XML Editor Support >> <support at oxygenxml.com <mailto:support at oxygenxml.com>> wrote: >> >> Hi, >> >> We've identified the issue as being class loader related. Oxygen >> comes bundled with an xml-apis.jar which contains javax.xml >> interfaces slightly different from the ones present in the JRE. The >> main problem regards class javax.xml.stream.XMLInputFactory from >> xml-apis.jar. First of all it requires >> com.ctc.wstx.stax.WstxInputFactory (for which you must add >> org.apache.servicemix.bundles.woodstox-3.2.7_1.jar) and it's missing >> method newFactory(). The API basex-xqj-1.2.3.jar is compatible with >> it because it uses newInstance() instead of newFactory(). So if you >> use basex-xqj-1.2.3.jar in the connection and also add >> org.apache.servicemix.bundles.woodstox-3.2.7_1.jar in Oxygen lib, >> the connection will begin to work. >> >> But there should be no need for you to add >> org.apache.servicemix.bundles.woodstox-3.2.7_1.jar so I've attached >> an xml-apis.jar with these interfaces removed. Just replace the >> xml-apis.jar from {oXygenInstallDir}/lib with this new version and >> the BaseX connection will function with just basex-xqj-1.2.3.jar, >> xqj-api-1.0.jar and xqj2-0.1.0.jar added in the connection. No need >> to add org.apache.servicemix.bundles.woodstox-3.2.7_1.jar either. >> >> I've also added an issue to fix this issue on our side in the next >> Oxygen build. >> >> Thank you for following this through! >> Alex >> -- >> Alex Jitianu >> <oXygen/> XML Editor, Schema Editor and XSLT Editor/Debugger >> http://www.oxygenxml.com >> >> >> On 26-Nov-12 5:21 AM, Alex Muir wrote: >>> >>> Hi, >>> >>> I decided to try using basex.exe on windows 7 on a virtual machine >>> with java 7. I get the same results given a fresh download and >>> install of java, oxygen and xqj. I pasted some screen shots so >>> perhaps you'll see the error I'm making or get a better idea of >>> that is not working. When I started the server windows 7 asked >>> permission for the firewall which I gave. I started the server >>> from gui and as well closing the gui and starting from the start >>> menu basex server (start) and both gave the same result. >>> >>> There must be some difference between yours and mine system or >>> some setup thing I'm doing wrong. >>> >>> On linux, I also tried adjusting firewall settings on fedora >>> although this had no affect. >>> >>> If you want to do some remote desktop interaction to check out my >>> system, your highly welcome. >>> >>> Regards >>> Alex >>> >>> >>> On Fri, Nov 23, 2012 at 10:06 PM, Alex Muir <alex.g.muir at gmail.com >>> <mailto:alex.g.muir at gmail.com>> wrote: >>> >>> >>> >>> On Fri, Nov 23, 2012 at 9:12 PM, Christian Grün <cg at basex.org >>> <mailto:cg at basex.org>> wrote: >>> >>> > Also I wonder why I was getting this error in oxygen? >>> >>> At which stage does this error occur? >>> >>> >>> When running the xquery I would get that error message >>> initially, though it seemed to go away randomly.. the >>> following error is the more common problem. *"E [BaseX7.3] >>> Could not initialize class net.xqj.basex.bin.m"* >>> >>> >>> >>> > Is the woodstox-core-asl-4.1.4.jar required in anyway >>> and if so how? >>> >>> I can’t find this jar in my environment; where did you get >>> it from? >>> >>> >>> >>> Well based on the error message I thought this jar was needed >>> given a search online although I really don't know why I was >>> getting that >>> error message or what to do about it nor if that jar is the >>> required although seemed likely when searching for that error >>> online. >>> >>> From here http://wiki.fasterxml.com/WoodstoxDownload >>> >>> >>> -- >>> - >>> >>> Alex G. Muir >>> Software Engineering Consultant >>> Linkedin Profile : >>> http://ca.linkedin.com/pub/alex-muir/36/ab7/125 >>> Love African Kora Music? Take a moment to listen to Gambia's - >>> Amadu Diabarte & Jali Bakary Konteh www.bafila.bandcamp.com >>> <http://www.bafila.bandcamp.com> Your support keeps Africa's >>> >>> griot tradition alive... Cheers! >>> >>> >>> >>> >>> -- >>> - >>> >>> Alex G. Muir >>> Software Engineering Consultant >>> Linkedin Profile : http://ca.linkedin.com/pub/alex-muir/36/ab7/125 >>> Love African Kora Music? Take a moment to listen to Gambia's - >>> Amadu Diabarte & Jali Bakary Konteh www.bafila.bandcamp.com >>> <http://www.bafila.bandcamp.com> Your support keeps Africa's griot >>> tradition alive... Cheers! >>> >> >> >> >> >> -- >> - >> >> Alex G. Muir >> Software Engineering Consultant >> Linkedin Profile : http://ca.linkedin.com/pub/alex-muir/36/ab7/125 >> Love African Kora Music? Take a moment to listen to Gambia's - Amadu >> Diabarte & Jali Bakary Konteh www.bafila.bandcamp.com >> <http://www.bafila.bandcamp.com> Your support keeps Africa's griot >> tradition alive... Cheers! >> >