Ugly exception "java.lang.ArrayIndexOutOfBoundsException"

Am 20.02.2013 13:20, schrieb Marco Lettere: > Hi all, > yesterday I stumbled upon a strange bug which today showed up again in > the exact same manner. > I got this nasty exception: > > Improper use? Potential bug? Your feedback is welcome: > Contact: basex-talk at mailman.uni-konstanz.de > Version: BaseX 7.6 > Java: Sun Microsystems Inc., 1.6.0_18 > OS: Linux, i386 > Stack Trace: > java.lang.ArrayIndexOutOfBoundsException: 2 > org.basex.io.random.TableDiskAccess.flush(TableDiskAccess.java:124) > org.basex.data.DiskData.finishUpdate(DiskData.java:212) > org.basex.core.cmd.Replace.run(Replace.java:78)

On 02/20/2013 03:42 PM, Leo Wörteler wrote: > Hi Marco, > > Am 20.02.2013 13:20, schrieb Marco Lettere: >> Hi all, >> yesterday I stumbled upon a strange bug which today showed up again in >> the exact same manner. >> I got this nasty exception: >> >> Improper use? Potential bug? Your feedback is welcome: >> Contact: basex-talk at mailman.uni-konstanz.de >> Version: BaseX 7.6 >> Java: Sun Microsystems Inc., 1.6.0_18 >> OS: Linux, i386 >> Stack Trace: >> java.lang.ArrayIndexOutOfBoundsException: 2 >> org.basex.io.random.TableDiskAccess.flush(TableDiskAccess.java:124) >> org.basex.data.DiskData.finishUpdate(DiskData.java:212) >> org.basex.core.cmd.Replace.run(Replace.java:78) > that actually sounds quite concerning. Do you have an example database

> with which we can reproduce the failure? That would greatly help us find > the bug you are experiencing. > > Leo >

On 02/20/2013 01:20 PM, Marco Lettere wrote: > Hi all, > yesterday I stumbled upon a strange bug which today showed up again in > the exact same manner. > > I wanted to replace, by calling this REST uri > (http://localhost:8984/rest/rlus/HCP/rules/CDAReports_rules.xml) from > firefox's poster tool, the following resource > > <hdataext:extension id="CDA2_REPORT" > xmlns:hdataext="urn:dedalus:hdata:extensions" > extensionId="CDA2_REPORT" contentType="application/xml"> > <hdataext:namespace prefix="hl7v3" href="urn:hl7-org:v3" /> > <hdataext:documentid>$input/cda:id/data(@extension)</hdataext:documentid> > <hdataext:documentname>concat($input/cda:templateId/data(@extension),'_',$input/cda:id/data(@extension),'.cda')</hdataext:documentname> > <hdataext:documentrecord>concat($input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@root),'_',$input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@extension))</hdataext:documentrecord> > <hdataext:documentaddress>concat("http://localhost:8984/rest/",$input)</hdataext:documentaddress> > <hdataext:documentmetadata>()</hdataext:documentmetadata> > </hdataext:extension> > > with this one > > <hdataext:extension id="CDA2_REPORT" > xmlns:hdataext="urn:dedalus:hdata:extensions" > extensionId="CDA2_REPORT" contentType="application/xml"> > <hdataext:namespace prefix="hl7v3" href="urn:hl7-org:v3" /> > <hdataext:namespace prefix="cda" href="urn:hl7-org:v3" /> > <hdataext:documentid>$input/cda:id/data(@extension)</hdataext:documentid> > <hdataext:documentname>concat($input/cda:templateId/data(@extension),'_',$input/cda:id/data(@extension),'.cda')</hdataext:documentname> > <hdataext:documentrecord>concat($input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@root),'_',$input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@extension))</hdataext:documentrecord> > <hdataext:documentaddress>concat("http://localhost:8984/rest/",$input)</hdataext:documentaddress> > <hdataext:documentmetadata>()</hdataext:documentmetadata> > </hdataext:extension> > > > I got this nasty exception: > > Improper use? Potential bug? Your feedback is welcome: > Contact: basex-talk at mailman.uni-konstanz.de > Version: BaseX 7.6 > Java: Sun Microsystems Inc., 1.6.0_18 > OS: Linux, i386 > Stack Trace: > java.lang.ArrayIndexOutOfBoundsException: 2 > org.basex.io.random.TableDiskAccess.flush(TableDiskAccess.java:124) > org.basex.data.DiskData.finishUpdate(DiskData.java:212) > org.basex.core.cmd.Replace.run(Replace.java:78) > org.basex.core.Command.run(Command.java:342) > org.basex.core.Command.exec(Command.java:321) > org.basex.core.Command.execute(Command.java:78) > org.basex.core.Command.execute(Command.java:90) > org.basex.server.LocalSession.execute(LocalSession.java:97) > org.basex.server.LocalSession.replace(LocalSession.java:81) > org.basex.http.rest.RESTPut.run(RESTPut.java:59) > org.basex.http.rest.RESTServlet.run(RESTServlet.java:14) > org.basex.http.BaseXServlet.service(BaseXServlet.java:39) > javax.servlet.http.HttpServlet.service(HttpServlet.java:848) > org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:648) > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:455) > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:559) > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:232) > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1072) > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:382) > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:194) > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1006) > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) > org.eclipse.jetty.server.Server.handle(Server.java:365) > org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:485) > org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:937) > org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:998) > org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:856) > org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) > org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) > org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:627) > org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:51) > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) > org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) > java.lang.Thread.run(Thread.java:619) > 1 resource(s) replaced in 2.47 ms. > > and as a MUCH WORSE side effect ... my database is completely messed > up. It shows up in the basexgui but when I try to open it nothing > happens and the basexgui yields the following exception: > > Exception occurred during event dispatching: > java.lang.RuntimeException: Data Access out of bounds: > - pre value: 0 > - #used blocks: 0 > - #total locks: 0 > - access: -1 (0 > -1] > at org.basex.util.Util.notexpected(Util.java:53) > at > org.basex.io.random.TableDiskAccess.cursor(TableDiskAccess.java:488) > at org.basex.io.random.TableDiskAccess.read1(TableDiskAccess.java:189) > at org.basex.data.Data.kind(Data.java:283) > at org.basex.query.value.node.DBNode.<init>(DBNode.java:49) > at org.basex.query.value.node.FTPosNode.<init>(FTPosNode.java:22) > at org.basex.data.Nodes.serialize(Nodes.java:227) > at org.basex.data.Nodes.serialize(Nodes.java:222) > at org.basex.gui.view.text.TextView.setText(TextView.java:142) > at org.basex.gui.view.text.TextView.refreshContext(TextView.java:104) > at org.basex.gui.view.text.TextView.refreshInit(TextView.java:90) > at org.basex.gui.view.ViewNotifier.init(ViewNotifier.java:80) > at > org.basex.gui.dialog.DialogProgress.execute(DialogProgress.java:204) > at > org.basex.gui.dialog.DialogProgress.execute(DialogProgress.java:146) > at > org.basex.gui.dialog.DialogProgress.execute(DialogProgress.java:124) > at org.basex.gui.dialog.DialogManage.close(DialogManage.java:249) > at org.basex.gui.dialog.DialogManage.action(DialogManage.java:145) > at > org.basex.gui.layout.BaseXButton$1.actionPerformed(BaseXButton.java:39) > at > javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995) > at > javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318) > at > javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) > at > javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242) > at > javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236) > at > java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) > at java.awt.Component.processMouseEvent(Component.java:6263) > at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) > at java.awt.Component.processEvent(Component.java:6028) > at java.awt.Container.processEvent(Container.java:2041) > at java.awt.Component.dispatchEventImpl(Component.java:4630) > at java.awt.Container.dispatchEventImpl(Container.java:2099) > at java.awt.Component.dispatchEvent(Component.java:4460) > at > java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4574) > at > java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238) > at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168) > at java.awt.Container.dispatchEventImpl(Container.java:2085) > at java.awt.Window.dispatchEventImpl(Window.java:2478) > at java.awt.Component.dispatchEvent(Component.java:4460) > at java.awt.EventQueue.dispatchEvent(EventQueue.java:599) > at > java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) > at > java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) > at > java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:178) > at java.awt.Dialog$1.run(Dialog.java:1046) > at java.awt.Dialog$3.run(Dialog.java:1098) > at java.security.AccessController.doPrivileged(Native Method) > at java.awt.Dialog.show(Dialog.java:1096) > at java.awt.Component.show(Component.java:1563) > at java.awt.Component.setVisible(Component.java:1515) > at java.awt.Window.setVisible(Window.java:842) > at java.awt.Dialog.setVisible(Dialog.java:986) > at org.basex.gui.layout.BaseXDialog.finish(BaseXDialog.java:111) > at org.basex.gui.dialog.DialogManage.<init>(DialogManage.java:119) > at org.basex.gui.GUICommands$2.execute(GUICommands.java:52) > at > org.basex.gui.layout.BaseXButton$3.actionPerformed(BaseXButton.java:95) > at > javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995) > at > javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318) > at > javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) > at > javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242) > at > javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236) > at > java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) > at > java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) > at java.awt.Component.processMouseEvent(Component.java:6263) > at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) > at java.awt.Component.processEvent(Component.java:6028) > at java.awt.Container.processEvent(Container.java:2041) > at java.awt.Component.dispatchEventImpl(Component.java:4630) > at java.awt.Container.dispatchEventImpl(Container.java:2099) > at java.awt.Component.dispatchEvent(Component.java:4460) > at > java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4574) > at > java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238) > at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168) > at java.awt.Container.dispatchEventImpl(Container.java:2085) > at java.awt.Window.dispatchEventImpl(Window.java:2478) > at java.awt.Component.dispatchEvent(Component.java:4460) > at java.awt.EventQueue.dispatchEvent(EventQueue.java:599) > at > java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) > at > java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) > at > java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) > at > java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) > at > java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) > at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) > > any hints? > Thank you. > M. > > > _______________________________________________ > BaseX-Talk mailing list > BaseX-Talk at mailman.uni-konstanz.de > https://mailman.uni-konstanz.de/mailman/listinfo/basex-talk

On Tue, Feb 26, 2013 at 9:58 AM, Marco Lettere <marco.lettere at dedalus.eu> wrote: > Independently on how I hard I try, I'm not able to recreate the problem. It > happened twice in two following days but now it's no t happening again ... > I've seen that the mail reporting the same exception: > > https://mailman.uni-konstanz.de/pipermail/basex-talk/2013-February/004690.html > > has been faced and solved > > https://mailman.uni-konstanz.de/pipermail/basex-talk/2013-February/004734.html > > Can anyone tell on whether the problem, under the hood, was the same? > Thank you. > M. > > > > On 02/20/2013 01:20 PM, Marco Lettere wrote: > > Hi all, > yesterday I stumbled upon a strange bug which today showed up again in the > exact same manner. > > I wanted to replace, by calling this REST uri > (http://localhost:8984/rest/rlus/HCP/rules/CDAReports_rules.xml) from > firefox's poster tool, the following resource > > <hdataext:extension id="CDA2_REPORT" > xmlns:hdataext="urn:dedalus:hdata:extensions" extensionId="CDA2_REPORT" > contentType="application/xml"> > <hdataext:namespace prefix="hl7v3" href="urn:hl7-org:v3" /> > > <hdataext:documentid>$input/cda:id/data(@extension)</hdataext:documentid> > > <hdataext:documentname>concat($input/cda:templateId/data(@extension),'_',$input/cda:id/data(@extension),'.cda')</hdataext:documentname> > > <hdataext:documentrecord>concat($input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@root),'_',$input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@extension))</hdataext:documentrecord> > > <hdataext:documentaddress>concat("http://localhost:8984/rest/",$input)</hdataext:documentaddress> > <hdataext:documentmetadata>()</hdataext:documentmetadata> > </hdataext:extension> > > with this one > > <hdataext:extension id="CDA2_REPORT" > xmlns:hdataext="urn:dedalus:hdata:extensions" extensionId="CDA2_REPORT" > contentType="application/xml"> > <hdataext:namespace prefix="hl7v3" href="urn:hl7-org:v3" /> > <hdataext:namespace prefix="cda" href="urn:hl7-org:v3" /> > > <hdataext:documentid>$input/cda:id/data(@extension)</hdataext:documentid> > > <hdataext:documentname>concat($input/cda:templateId/data(@extension),'_',$input/cda:id/data(@extension),'.cda')</hdataext:documentname> > > <hdataext:documentrecord>concat($input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@root),'_',$input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@extension))</hdataext:documentrecord> > > <hdataext:documentaddress>concat("http://localhost:8984/rest/",$input)</hdataext:documentaddress> > <hdataext:documentmetadata>()</hdataext:documentmetadata> > </hdataext:extension> > > > I got this nasty exception: > > Improper use? Potential bug? Your feedback is welcome: > Contact: basex-talk at mailman.uni-konstanz.de > Version: BaseX 7.6 > Java: Sun Microsystems Inc., 1.6.0_18 > OS: Linux, i386 > Stack Trace: > java.lang.ArrayIndexOutOfBoundsException: 2 > org.basex.io.random.TableDiskAccess.flush(TableDiskAccess.java:124) > org.basex.data.DiskData.finishUpdate(DiskData.java:212) > org.basex.core.cmd.Replace.run(Replace.java:78) > org.basex.core.Command.run(Command.java:342) > org.basex.core.Command.exec(Command.java:321) > org.basex.core.Command.execute(Command.java:78) > org.basex.core.Command.execute(Command.java:90) > org.basex.server.LocalSession.execute(LocalSession.java:97) > org.basex.server.LocalSession.replace(LocalSession.java:81) > org.basex.http.rest.RESTPut.run(RESTPut.java:59) > org.basex.http.rest.RESTServlet.run(RESTServlet.java:14) > org.basex.http.BaseXServlet.service(BaseXServlet.java:39) > javax.servlet.http.HttpServlet.service(HttpServlet.java:848) > org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:648) > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:455) > > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) > > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:559) > > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:232) > > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1072) > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:382) > > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:194) > > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1006) > > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) > > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) > org.eclipse.jetty.server.Server.handle(Server.java:365) > > org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:485) > > org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:937) > > org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:998) > org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:856) > org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) > > org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) > > org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:627) > > org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:51) > > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) > > org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) > java.lang.Thread.run(Thread.java:619) > 1 resource(s) replaced in 2.47 ms. > > and as a MUCH WORSE side effect ... my database is completely messed up. It > shows up in the basexgui but when I try to open it nothing happens and the > basexgui yields the following exception: > > Exception occurred during event dispatching: > java.lang.RuntimeException: Data Access out of bounds: > - pre value: 0 > - #used blocks: 0 > - #total locks: 0 > - access: -1 (0 > -1] > at org.basex.util.Util.notexpected(Util.java:53) > at org.basex.io.random.TableDiskAccess.cursor(TableDiskAccess.java:488) > at org.basex.io.random.TableDiskAccess.read1(TableDiskAccess.java:189) > at org.basex.data.Data.kind(Data.java:283) > at org.basex.query.value.node.DBNode.<init>(DBNode.java:49) > at org.basex.query.value.node.FTPosNode.<init>(FTPosNode.java:22) > at org.basex.data.Nodes.serialize(Nodes.java:227) > at org.basex.data.Nodes.serialize(Nodes.java:222) > at org.basex.gui.view.text.TextView.setText(TextView.java:142) > at org.basex.gui.view.text.TextView.refreshContext(TextView.java:104) > at org.basex.gui.view.text.TextView.refreshInit(TextView.java:90) > at org.basex.gui.view.ViewNotifier.init(ViewNotifier.java:80) > at org.basex.gui.dialog.DialogProgress.execute(DialogProgress.java:204) > at org.basex.gui.dialog.DialogProgress.execute(DialogProgress.java:146) > at org.basex.gui.dialog.DialogProgress.execute(DialogProgress.java:124) > at org.basex.gui.dialog.DialogManage.close(DialogManage.java:249) > at org.basex.gui.dialog.DialogManage.action(DialogManage.java:145) > at > org.basex.gui.layout.BaseXButton$1.actionPerformed(BaseXButton.java:39) > at > javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995) > at > javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318) > at > javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) > at > javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242) > at > javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236) > at > java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) > at java.awt.Component.processMouseEvent(Component.java:6263) > at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) > at java.awt.Component.processEvent(Component.java:6028) > at java.awt.Container.processEvent(Container.java:2041) > at java.awt.Component.dispatchEventImpl(Component.java:4630) > at java.awt.Container.dispatchEventImpl(Container.java:2099) > at java.awt.Component.dispatchEvent(Component.java:4460) > at > java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4574) > at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238) > at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168) > at java.awt.Container.dispatchEventImpl(Container.java:2085) > at java.awt.Window.dispatchEventImpl(Window.java:2478) > at java.awt.Component.dispatchEvent(Component.java:4460) > at java.awt.EventQueue.dispatchEvent(EventQueue.java:599) > at > java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) > at > java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) > at > java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:178) > at java.awt.Dialog$1.run(Dialog.java:1046) > at java.awt.Dialog$3.run(Dialog.java:1098) > at java.security.AccessController.doPrivileged(Native Method) > at java.awt.Dialog.show(Dialog.java:1096) > at java.awt.Component.show(Component.java:1563) > at java.awt.Component.setVisible(Component.java:1515) > at java.awt.Window.setVisible(Window.java:842) > at java.awt.Dialog.setVisible(Dialog.java:986) > at org.basex.gui.layout.BaseXDialog.finish(BaseXDialog.java:111) > at org.basex.gui.dialog.DialogManage.<init>(DialogManage.java:119) > at org.basex.gui.GUICommands$2.execute(GUICommands.java:52) > at > org.basex.gui.layout.BaseXButton$3.actionPerformed(BaseXButton.java:95) > at > javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995) > at > javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318) > at > javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) > at > javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242) > at > javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236) > at > java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) > at > java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) > at java.awt.Component.processMouseEvent(Component.java:6263) > at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) > at java.awt.Component.processEvent(Component.java:6028) > at java.awt.Container.processEvent(Container.java:2041) > at java.awt.Component.dispatchEventImpl(Component.java:4630) > at java.awt.Container.dispatchEventImpl(Container.java:2099) > at java.awt.Component.dispatchEvent(Component.java:4460) > at > java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4574) > at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238) > at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168) > at java.awt.Container.dispatchEventImpl(Container.java:2085) > at java.awt.Window.dispatchEventImpl(Window.java:2478) > at java.awt.Component.dispatchEvent(Component.java:4460) > at java.awt.EventQueue.dispatchEvent(EventQueue.java:599) > at > java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) > at > java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) > at > java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) > at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) > at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) > at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) > > any hints? > Thank you. > M. > > > _______________________________________________ > BaseX-Talk mailing list > BaseX-Talk at mailman.uni-konstanz.de > https://mailman.uni-konstanz.de/mailman/listinfo/basex-talk > > > > _______________________________________________ > BaseX-Talk mailing list > BaseX-Talk at mailman.uni-konstanz.de > https://mailman.uni-konstanz.de/mailman/listinfo/basex-talk >

De : "Marco Lettere" <marco.lettere at dedalus.eu> Pour : <basex-talk at mailman.uni-konstanz.de> Objet : [basex-talk] Ugly exception "java.lang.ArrayIndexOutOfBoundsException" Date : mar., févr. 26, 2013 09:58 Independently on how I hard I try, I'm not able to recreate the problem. It happened twice in two following days but now it's no t happening again ... I've seen that the mail reporting the same exception: https://mailman.uni-konstanz.de/pipermail/basex-talk/2013-February/004690.html has been faced and solved https://mailman.uni-konstanz.de/pipermail/basex-talk/2013-February/004734.html Can anyone tell on whether the problem, under the hood, was the same? Thank you. M. On 02/20/2013 01:20 PM, Marco Lettere wrote: Hi all, yesterday I stumbled upon a strange bug which today showed up again in the exact same manner. I wanted to replace, by calling this REST uri (http://localhost:8984/rest/rlus/HCP/rules/CDAReports_rules.xml) from firefox's poster tool, the following resource <hdataext:extension id="CDA2_REPORT" xmlns:hdataext="urn:dedalus:hdata:extensions" extensionId="CDA2_REPORT" contentType="application/xml"> <hdataext:namespace prefix="hl7v3" href="urn:hl7-org:v3" /> <hdataext:documentid>$input/cda:id/data(@extension)</hdataext:documentid> <hdataext:documentname>concat($input/cda:templateId/data(@extension),'_',$input/cda:id/data(@extension),'.cda')</hdataext:documentname> <hdataext:documentrecord>concat($input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@root),'_',$input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@extension))</hdataext:documentrecord> <hdataext:documentaddress>concat("http://localhost:8984/rest/",$input)</hdataext:documentaddress> <hdataext:documentmetadata>()</hdataext:documentmetadata> </hdataext:extension> with this one <hdataext:extension id="CDA2_REPORT" xmlns:hdataext="urn:dedalus:hdata:extensions" extensionId="CDA2_REPORT" contentType="application/xml"> <hdataext:namespace prefix="hl7v3" href="urn:hl7-org:v3" /> <hdataext:namespace prefix="cda" href="urn:hl7-org:v3" /> <hdataext:documentid>$input/cda:id/data(@extension)</hdataext:documentid> <hdataext:documentname>concat($input/cda:templateId/data(@extension),'_',$input/cda:id/data(@extension),'.cda')</hdataext:documentname> <hdataext:documentrecord>concat($input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@root),'_',$input//cda:patientRole/cda:id[@root='2.16.840.1.113883.2.9.4.3.2']/data(@extension))</hdataext:documentrecord> <hdataext:documentaddress>concat("http://localhost:8984/rest/",$input)</hdataext:documentaddress> <hdataext:documentmetadata>()</hdataext:documentmetadata> </hdataext:extension> I got this nasty exception: Improper use? Potential bug? Your feedback is welcome: Contact: basex-talk at mailman.uni-konstanz.de Version: BaseX 7.6 Java: Sun Microsystems Inc., 1.6.0_18 OS: Linux, i386 Stack Trace: java.lang.ArrayIndexOutOfBoundsException: 2 org.basex.io.random.TableDiskAccess.flush(TableDiskAccess.java:124) org.basex.data.DiskData.finishUpdate(DiskData.java:212) org.basex.core.cmd.Replace.run(Replace.java:78) org.basex.core.Command.run(Command.java:342) org.basex.core.Command.exec(Command.java:321) org.basex.core.Command.execute(Command.java:78) org.basex.core.Command.execute(Command.java:90) org.basex.server.LocalSession.execute(LocalSession.java:97) org.basex.server.LocalSession.replace(LocalSession.java:81) org.basex.http.rest.RESTPut.run(RESTPut.java:59) org.basex.http.rest.RESTServlet.run(RESTServlet.java:14) org.basex.http.BaseXServlet.service(BaseXServlet.java:39) javax.servlet.http.HttpServlet.service(HttpServlet.java:848) org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:648) org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:455) org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:559) org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:232) org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1072) org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:382) org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:194) org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1006) org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) org.eclipse.jetty.server.Server.handle(Server.java:365) org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:485) org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:937) org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:998) org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:856) org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:627) org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:51) org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) java.lang.Thread.run(Thread.java:619) 1 resource(s) replaced in 2.47 ms. and as a MUCH WORSE side effect ... my database is completely messed up. It shows up in the basexgui but when I try to open it nothing happens and the basexgui yields the following exception: Exception occurred during event dispatching: java.lang.RuntimeException: Data Access out of bounds: - pre value: 0 - #used blocks: 0 - #total locks: 0 - access: -1 (0 > -1] at org.basex.util.Util.notexpected(Util.java:53) at org.basex.io.random.TableDiskAccess.cursor(TableDiskAccess.java:488) at org.basex.io.random.TableDiskAccess.read1(TableDiskAccess.java:189) at org.basex.data.Data.kind(Data.java:283) at org.basex.query.value.node.DBNode.<init>(DBNode.java:49) at org.basex.query.value.node.FTPosNode.<init>(FTPosNode.java:22) at org.basex.data.Nodes.serialize(Nodes.java:227) at org.basex.data.Nodes.serialize(Nodes.java:222) at org.basex.gui.view.text.TextView.setText(TextView.java:142) at org.basex.gui.view.text.TextView.refreshContext(TextView.java:104) at org.basex.gui.view.text.TextView.refreshInit(TextView.java:90) at org.basex.gui.view.ViewNotifier.init(ViewNotifier.java:80) at org.basex.gui.dialog.DialogProgress.execute(DialogProgress.java:204) at org.basex.gui.dialog.DialogProgress.execute(DialogProgress.java:146) at org.basex.gui.dialog.DialogProgress.execute(DialogProgress.java:124) at org.basex.gui.dialog.DialogManage.close(DialogManage.java:249) at org.basex.gui.dialog.DialogManage.action(DialogManage.java:145) at org.basex.gui.layout.BaseXButton$1.actionPerformed(BaseXButton.java:39) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) at java.awt.Component.processMouseEvent(Component.java:6263) at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) at java.awt.Component.processEvent(Component.java:6028) at java.awt.Container.processEvent(Container.java:2041) at java.awt.Component.dispatchEventImpl(Component.java:4630) at java.awt.Container.dispatchEventImpl(Container.java:2099) at java.awt.Component.dispatchEvent(Component.java:4460) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4574) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168) at java.awt.Container.dispatchEventImpl(Container.java:2085) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4460) at java.awt.EventQueue.dispatchEvent(EventQueue.java:599) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:178) at java.awt.Dialog$1.run(Dialog.java:1046) at java.awt.Dialog$3.run(Dialog.java:1098) at java.security.AccessController.doPrivileged(Native Method) at java.awt.Dialog.show(Dialog.java:1096) at java.awt.Component.show(Component.java:1563) at java.awt.Component.setVisible(Component.java:1515) at java.awt.Window.setVisible(Window.java:842) at java.awt.Dialog.setVisible(Dialog.java:986) at org.basex.gui.layout.BaseXDialog.finish(BaseXDialog.java:111) at org.basex.gui.dialog.DialogManage.<init>(DialogManage.java:119) at org.basex.gui.GUICommands$2.execute(GUICommands.java:52) at org.basex.gui.layout.BaseXButton$3.actionPerformed(BaseXButton.java:95) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272) at java.awt.Component.processMouseEvent(Component.java:6263) at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) at java.awt.Component.processEvent(Component.java:6028) at java.awt.Container.processEvent(Container.java:2041) at java.awt.Component.dispatchEventImpl(Component.java:4630) at java.awt.Container.dispatchEventImpl(Container.java:2099) at java.awt.Component.dispatchEvent(Component.java:4460) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4574) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168) at java.awt.Container.dispatchEventImpl(Container.java:2085) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4460) at java.awt.EventQueue.dispatchEvent(EventQueue.java:599) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) any hints? Thank you. M. BaseX-Talk mailing list BaseX-Talk at mailman.uni-konstanz.de https://mailman.uni-konstanz.de/mailman/listinfo/basex-talk